SNP Profiles of CRU 156 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
1._RUQ_880	_	_	AA	GT	TT	_	AA	CC	GG	CC	_	_	AA	_
2._GC-01-131-7-08	CT	CC	AA	GT	CT	GG	AC	GG	AG	CT	AG	AG	AT	CG
3._GC-01-131-7-08	CT	CC	AA	GT	CT	GG	AC	GG	AG	CT	AG	AG	AT	CG
4._GC-01-131-7-08	CT	CC	AA	GT	CT	GG	AC	GG	AG	CT	AG	AG	AT	CG
5._GC-01-131-7-08	CT	CC	AA	GT	CT	GG	AC	GG	AG	CT	AG	AG	AT	CG
6._GC-01-131-7-08	CT	CC	AA	GT	CT	GG	AC	GG	AG	CT	AG	AG	AT	CG
7._CRU_156	_	_	AA	GT	CT	_	AC	GG	AG	CT	_	_	AT	_
8._CRU_156	_	_	AA	GT	CT	_	AC	GG	AG	CT	_	_	AT	_
9._CRU_156	_	_	AA	GT	CT	_	AC	GG	AG	CT	_	_	AT	_
10._CRU_156	_	_	AA	GT	CT	_	AC	GG	AG	CT	_	_	AT	_
11._CRU_156	_	_	AA	GT	CT	_	AC	GG	AG	CT	_	_	AT	_
12._RUQ_880	_	_	CC	_	_	_	_	_	AG	_	AG	_	_	_
13._CRU_156	_	_	AC	GT	CT	_	CC	GG	AA	CT	_	_	AA	_
14._RUQ_880	AA	CC	AA	AA	AA	GG	AA	GG	GG	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
1._RUQ_880	AG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
2._GC-01-131-7-08	AA	CC	CC	GT	CC	AC	CC	CT	CC	GG	GG	GT	AC	CC
3._GC-01-131-7-08	AA	CC	CC	GT	CC	AC	CC	CT	CC	GG	GG	GT	AC	CC
4._GC-01-131-7-08	AA	CC	CC	GT	CC	AC	CC	CT	CC	GG	GG	GT	AC	CC
5._GC-01-131-7-08	AA	CC	CC	GT	CC	AC	CC	CT	CC	GG	GG	GT	AC	CC
6._GC-01-131-7-08	AA	CC	CC	GT	CC	AC	CC	CT	CC	GG	GG	GT	AC	CC
7._CRU_156	AA	CC	CC	GT	CC	AC	_	CT	_	GG	_	_	_	CC
8._CRU_156	AA	CC	CC	GT	CC	AC	_	CT	_	GG	_	_	_	CC
9._CRU_156	AA	CC	CC	GT	CC	AC	_	CT	_	GG	_	_	_	CC
10._CRU_156	AA	CC	CC	GT	CC	AC	_	CT	_	GG	_	_	_	CC
11._CRU_156	AA	CC	CC	GT	CC	AC	_	CT	_	GG	_	_	_	CC
12._RUQ_880	_	CC	_	_	CC	CC	CC	_	CC	GT	GG	_	CC	GG
13._CRU_156	AA	AC	CT	GG	GG	AC	_	_	_	GG	_	_	_	CC
14._RUQ_880	_	AA	_	CC	CC	CC	GG	GG	_	CC	AA	AA	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	CC	CC	GG	GG	TT	TT	TT	CC	CC	GG	GG
1._RUQ_880	_	CC	AG	_	CC	_	_	_	TT	_	_	CC	GG	GG
2._GC-01-131-7-08	CC	CC	AA	TT	CT	GT	AG	AT	GT	TT	CC	CT	CG	AA
3._GC-01-131-7-08	CC	CC	AA	TT	CT	GT	AG	AT	GT	TT	CC	CT	CG	AA
4._GC-01-131-7-08	CC	CC	AA	TT	CT	GT	AG	AT	GT	TT	CC	CT	CG	AA
5._GC-01-131-7-08	CC	CC	AA	TT	CT	GT	AG	AT	GT	TT	CC	CT	CG	AA
6._GC-01-131-7-08	CC	CC	AA	TT	CT	GT	AG	AT	GT	TT	CC	CT	CG	AA
7._CRU_156	_	CC	AA	_	CT	_	_	_	GT	_	_	CT	CG	AA
8._CRU_156	_	CC	AA	_	CT	_	_	_	GT	_	_	CT	CG	AA
9._CRU_156	_	CC	AA	_	CT	_	_	_	GT	_	_	CT	CG	AA
10._CRU_156	_	CC	AA	_	CT	_	_	_	GT	_	_	CT	CG	AA
11._CRU_156	_	CC	AA	_	CT	_	_	_	GT	_	_	CT	CG	AA
12._RUQ_880	_	_	AG	TT	_	_	_	_	GT	_	_	_	CG	_
13._CRU_156	_	CT	AA	_	CT	_	_	_	GT	_	_	CT	CG	GG
14._RUQ_880	_	GG	AA	_	GG	CC	GG	_	AA	AA	GG	GG	CC	GG

Input profile: CRU_156 RUQ_880

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._CRU_156 RUQ_880

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

3._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

4._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

6._CRU_156 GC-01-131-7-08

58.3 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._CRU_156

54.2 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 6

Dapeng Zhang, 2016

8._CRU_156

54.2 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 5

Dapeng Zhang, 2016

9._CRU_156

54.2 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 3

Dapeng Zhang, 2016

10._CRU_156

54.2 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 2

Dapeng Zhang, 2016

11._CRU_156

54.2 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._CRU_156 RUQ_880

50 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

13._CRU_156

50 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X2 Y1

Dapeng Zhang, 2016

14._CRU_156 RUQ_880

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484